A few of our tours end in the Kansai region (Kyoto or Osaka). The return flight then goes from from Kansai International Airport (KIX), the 3rd largest airport in Japan, offering many possibilities for return flights to Europe without any real extra cost compared to a return flight from Tokyo. On these tours, the Japan Rail Pass does not cover the whole tour, allowing you to reduce the total price of the tour. And this without losing any transport possibilities as the Japan Rail Pass is of little use in Kansai.
However, tours are available from Tokyo and sometimes other cities in Japan.